Bio / topics
I am a PhD student in Bioinformatics in my final year at the University of Lille. My thesis focuses on the alignment of viral data from 3rd generation sequencing technology.
Education
- Ph.D in Bioinformatic, Université de Lille, 2025 (expected)
- M.S. in Bioinformatic, Université de Bordeaux, 2022
- B.S. in Biology, Université de Bordeaux, 2020
Work experience
- 2022: PhD Student
- Université de Lille, CRIStAL
- Supervisor: Mikael Salson & Camille Marchet
Internship
- 2022 (6 months): Research Assistant
- Université de Lille, CRIStAL
- Benchmark of long read aligner
- Supervisor: Camille Marchet
- 2021 (3 month): Research Assistant
- Université de Bordeaux, LaBRI
- Development of a toolbox for handling archaeological documents
- Supervisor: Marie Beurton-Aimar
Publications
Assessing Long-Read Mappers for Viral Genomics
Thomas Baudeau, Camille Marchet, Mikaël Salson. (2024). "Assessing Long-Read Mappers for Viral Genomics." Biorxiv.
Improved sub-genomic RNA prediction with the ARTIC protocol
Thomas Baudeau ,Kristoffer Sahlin. "Improved sub-genomic RNA prediction with the ARTIC protocol; Nucleic Acids Research.
A survey of mapping algorithms in the long-reads era
Kristoffer Sahlin, Thomas Baudeau, Bastien Cazaux, Camille Marchet. (2023). "A survey of mapping algorithms in the long-reads era." Genome Biology.
Talks
SeqBIM
Talk at Université de Lille, CRIStAL, Bordeaux, France
SeqBIM
Talk at Université de Bordeaux, LABRI, Bordeaux, France